Mercurial > repos > testtool > get_geo
comparison getGEO/getGEO.xml @ 11:2418fe6a0d12 draft
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author | testtool |
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date | Wed, 18 Jan 2017 11:35:14 -0500 |
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children | a0fefac1e0e1 |
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10:b4f24cef49be | 11:2418fe6a0d12 |
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1 <tool id="GEO" name="getGEO" version="1.16.2"> | |
2 <requirements> | |
3 <requirement name="package_r_3_2_1" type="package" version="3.2.1">R</requirement> | |
4 </requirements> | |
5 <stdio> | |
6 <exit_code range="1:" /> | |
7 </stdio> | |
8 <command> Rscript $__tool_directory__/getGEO.R "$GSMTable" "$MetaTable" "$IlmnTable" "$gmTable"</command> | |
9 <inputs> | |
10 <param optional="false" format="csv" name="GSMTable" type="data" value="" help="GEO table of data." label="[required] GSMTable"> | |
11 <validator type="empty_field" message="This field is required."/> | |
12 </param> | |
13 </inputs> | |
14 <outputs> | |
15 <data format="csv" name="MetaTable" label="MetaData.csv"/> | |
16 <data format="csv" name="IlmnTable" label="IlmnData.csv"/> | |
17 <data format="csv" name="gmTable" label="gmSet.csv"/> | |
18 </outputs> | |
19 <tests> | |
20 <test> | |
21 <param name="test"> | |
22 <element name="test-data"> | |
23 <collection type="data"> | |
24 <element name="GSMTable" value="test-data/input.csv" /> | |
25 </collection> | |
26 </element> | |
27 </param> | |
28 <output format="csv" name="MetaTable" label="test-data/MetaTable.csv"/> | |
29 <output format="csv" name="IlmnTable" label="test-data/IlmnTable.csv"/> | |
30 <output format="csv" name="gmTable" label="test-data/gmTable.csv"/> | |
31 </test> | |
32 </tests> | |
33 <help> | |
34 **Description** | |
35 </help> | |
36 <citations> | |
37 GEO | |
38 </citations> | |
39 </tool> |