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comparison GEO/getGEO.xml @ 23:70ad38b81a10 draft

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author testtool
date Mon, 06 Feb 2017 09:30:24 -0500
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22:fe105dbd7e1e 23:70ad38b81a10
1 <tool id="GEO" name="getGEO" version="1.16.2">
2 <?xml version='1.0' encoding='utf-8'?>
3 <requirements>
4 <requirement type="package" version="3.2.1">R</requirement>
5 </requirements>
6 <stdio>
7 <exit_code range="1:" />
8 </stdio>
9 <command> Rscript $__tool_directory__/getGEO.R "$GSMTable" "$MetaTable" "$IlmnTable" "$gmTable"</command>
10 <inputs>
11 <param optional="false" format="csv" name="GSMTable" type="data" value="" help="GEO table of data." label="[required] GSMTable">
12 <validator type="empty_field" message="This field is required."/>
13 </param>
14 </inputs>
15 <outputs>
16 <data format="csv" name="MetaTable" label="MetaData.csv"/>
17 <data format="csv" name="IlmnTable" label="IlmnData.csv"/>
18 <data format="csv" name="gmTable" label="gmSet.csv"/>
19 </outputs>
20 <tests>
21 <test>
22 <param name="test">
23 <element name="test-data">
24 <collection type="data">
25 <element name="GSMTable" value="test-data/input.csv" />
26 </collection>
27 </element>
28 </param>
29 <output format="csv" name="MetaTable" label="test-data/MetaTable.csv"/>
30 <output format="csv" name="IlmnTable" label="test-data/IlmnTable.csv"/>
31 <output format="csv" name="gmTable" label="test-data/gmTable.csv"/>
32 </test>
33 </tests>
34 <help>
35 **Description**
36 </help>
37 <citations>
38 GEO
39 </citations>
40 </tool>