Mercurial > repos > testtool > get_geo

comparison getGEO/getGEO.xml @ 16:73cd17bea9c4 draft

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author testtool
date Thu, 19 Jan 2017 06:47:30 -0500
parents c035531adb1b
children 3d473c9671db
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15:c035531adb1b 16:73cd17bea9c4
1 <tool id="GEO" name="getGEO" version="1.16.2"> 1 <tool id="GEO" name="getGEO" version="1.16.2">
2 <macros> 2 <requirements>
3 <import>getGEO_macros.xml</import> 3 <requirement name="methyldata_1_16_2" type="package" version="1.16.2">methyldata</requirement>
4 </macros> 4 </requirements>
5 <expand macro="requirements" />
6 <stdio> 5 <stdio>
7 <exit_code range="1:" /> 6 <exit_code range="1:" />
8 </stdio> 7 </stdio>
9 <command> Rscript $__tool_directory__/getGEO.R "$GSMTable" "$MetaTable" "$IlmnTable" "$gmTable"</command> 8 <command> Rscript $__tool_directory__/getGEO.R "$GSMTable" "$MetaTable" "$IlmnTable" "$gmTable"</command>
10 <inputs> 9 <inputs>
11 <param optional="false" format="csv" name="GSMTable" type="data" value="" help="GEO table of data." label="[required] GSMTable"> 10 <param optional="false" format="csv" name="GSMTable" type="data" value="" help="GEO table of data." label="[required] GSMTable">
12 <validator type="empty_field" message="This field is required."/> 11 <validator type="empty_field" message="This field is required."/>