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comparison GEO/getGEO.xml @ 36:a266a7c268e9 draft

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author testtool
date Thu, 09 Feb 2017 10:13:04 -0500
parents 0262f5edecb9
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35:0262f5edecb9 36:a266a7c268e9
1 <tool id="GEO" name="getGEO" version="1.16.2"> 1 <tool id="GEO" name="getGEO" version="1.16.2">
2 <?xml version='1.0' encoding='utf-8'?> 2 <?xml version='1.0' encoding='utf-8'?>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="3.2.1">R</requirement> 4 <requirement type="package" version="3.2.1">R</requirement>
5 </requirements> 5 </requirements>
6 <stdio>
7 <exit_code range="1:"></exit_code>
8 </stdio>
6 <command> Rscript $__tool_directory__/getGEO.R "$GSMTable" "$MetaTable" "$IlmnTable" "$gmTable"</command> 9 <command> Rscript $__tool_directory__/getGEO.R "$GSMTable" "$MetaTable" "$IlmnTable" "$gmTable"</command>
7 <inputs> 10 <inputs>
8 <param optional="false" format="csv" name="GSMTable" type="data" value="" help="GEO table of data." label="[required] GSMTable"> 11 <param optional="false" format="csv" name="GSMTable" type="data" value="" help="GEO table of data." label="[required] GSMTable">
9 <validator type="empty_field" message="This field is required."/> 12 <validator type="empty_field" message="This field is required."/>
10 </param> 13 </param>