Mercurial > repos > testtool > get_geo
comparison getGEO/getGEO.R @ 12:fafbd5bb1f05 draft
Uploaded
author | testtool |
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date | Wed, 18 Jan 2017 11:52:53 -0500 |
parents | 2418fe6a0d12 |
children | f49d9ccacc73 |
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11:2418fe6a0d12 | 12:fafbd5bb1f05 |
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1 require("BiocGenerics", quietly = TRUE) | 1 require("BiocGenerics", quietly = TRUE) |
2 require("data.table", quietly = TRUE) | 2 require("data.table", quietly = TRUE) |
3 require("GEOquery", quietly = TRUE) | 3 require("GEOquery", quietly = TRUE) |
4 require("rtracklayer", quietly = TRUE) | 4 require("rtracklayer", quietly = TRUE) |
5 require("FDb.InfiniumMethylation.hg19", quietly = TRUE) | |
5 | 6 |
6 options(warn = -1) | 7 options(warn = -1) |
7 args <- commandArgs(trailingOnly = TRUE) | 8 args <- commandArgs(trailingOnly = TRUE) |
8 GSMTable = args[1] | 9 GSMTable = args[1] |
9 MetaTable = args[2] | 10 MetaTable = args[2] |