Mercurial > repos > testtool > get_geo

comparison getGEO/getGEO.R @ 12:fafbd5bb1f05 draft

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author testtool
date Wed, 18 Jan 2017 11:52:53 -0500
parents 2418fe6a0d12
children f49d9ccacc73
comparison
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11:2418fe6a0d12 12:fafbd5bb1f05
1 require("BiocGenerics", quietly = TRUE) 1 require("BiocGenerics", quietly = TRUE)
2 require("data.table", quietly = TRUE) 2 require("data.table", quietly = TRUE)
3 require("GEOquery", quietly = TRUE) 3 require("GEOquery", quietly = TRUE)
4 require("rtracklayer", quietly = TRUE) 4 require("rtracklayer", quietly = TRUE)
5 require("FDb.InfiniumMethylation.hg19", quietly = TRUE)
5 6
6 options(warn = -1) 7 options(warn = -1)
7 args <- commandArgs(trailingOnly = TRUE) 8 args <- commandArgs(trailingOnly = TRUE)
8 GSMTable = args[1] 9 GSMTable = args[1]
9 MetaTable = args[2] 10 MetaTable = args[2]