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comparison getGEO/.Rhistory @ 22:fe105dbd7e1e draft

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author testtool
date Mon, 06 Feb 2017 09:23:31 -0500
parents 2418fe6a0d12
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21:9746b310d9ad 22:fe105dbd7e1e
1 first<-getGEO(TAB$ID[1],getGPL=FALSE)
2 require("BiocGenerics",quietly = TRUE)
3 require("data.table",quietly = TRUE)
4 require("minfi",quietly = TRUE)
5 require("ChIPseeker",quietly = TRUE)
6 require("ChIPpeakAnno",quietly = TRUE)
7 require("TxDb.Hsapiens.UCSC.hg19.knownGene",quietly = TRUE)
8 require("FDb.InfiniumMethylation.hg19",quietly = TRUE)
9 require("GEOquery",quietly = TRUE)
10 require("rtracklayer",quietly = TRUE)
11 install.packages("formatR")
12 library(formatR)
13 getwd()
14 tidy_eval("/Users/katarzynamurat/Desktop/galaxy/tools/getGEO")
15 tidy_eval("/Users/katarzynamurat/Desktop/galaxy/tools/getGEO")
16 source('~/Desktop/galaxy/tools/findDMR/findDMR.R')
17 source('~/Desktop/galaxy/tools/findDMR/findDMR.R')