Mercurial > repos > testtool > get_geo

diff getGEO/.Rhistory @ 11:2418fe6a0d12 draft

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author testtool
date Wed, 18 Jan 2017 11:35:14 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/getGEO/.Rhistory	Wed Jan 18 11:35:14 2017 -0500
@@ -0,0 +1,17 @@
+first<-getGEO(TAB$ID[1],getGPL=FALSE)
+require("BiocGenerics",quietly = TRUE)
+require("data.table",quietly = TRUE)
+require("minfi",quietly = TRUE)
+require("ChIPseeker",quietly = TRUE)
+require("ChIPpeakAnno",quietly = TRUE)
+require("TxDb.Hsapiens.UCSC.hg19.knownGene",quietly = TRUE)
+require("FDb.InfiniumMethylation.hg19",quietly = TRUE)
+require("GEOquery",quietly = TRUE)
+require("rtracklayer",quietly = TRUE)
+install.packages("formatR")
+library(formatR)
+getwd()
+tidy_eval("/Users/katarzynamurat/Desktop/galaxy/tools/getGEO")
+tidy_eval("/Users/katarzynamurat/Desktop/galaxy/tools/getGEO")
+source('~/Desktop/galaxy/tools/findDMR/findDMR.R')
+source('~/Desktop/galaxy/tools/findDMR/findDMR.R')