Mercurial > repos > testtool > get_geo

view getGEO/.Rhistory @ 13:8c5fb91cba27 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author testtool
date Thu, 19 Jan 2017 06:38:21 -0500
parents 2418fe6a0d12
children
line wrap: on
line source

first<-getGEO(TAB$ID[1],getGPL=FALSE)
require("BiocGenerics",quietly = TRUE)
require("data.table",quietly = TRUE)
require("minfi",quietly = TRUE)
require("ChIPseeker",quietly = TRUE)
require("ChIPpeakAnno",quietly = TRUE)
require("TxDb.Hsapiens.UCSC.hg19.knownGene",quietly = TRUE)
require("FDb.InfiniumMethylation.hg19",quietly = TRUE)
require("GEOquery",quietly = TRUE)
require("rtracklayer",quietly = TRUE)
install.packages("formatR")
library(formatR)
getwd()
tidy_eval("/Users/katarzynamurat/Desktop/galaxy/tools/getGEO")
tidy_eval("/Users/katarzynamurat/Desktop/galaxy/tools/getGEO")
source('~/Desktop/galaxy/tools/findDMR/findDMR.R')
source('~/Desktop/galaxy/tools/findDMR/findDMR.R')