Mercurial > repos > testtool > get_gr_set

annotate getGRsetFromGEO/getGRsetFromGEO.R @ 0:457c1fc71f64 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author testtool
date Sun, 11 Jun 2017 06:21:37 -0400
parents
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
457c1fc71f64 Uploaded
testtool
parents:
diff changeset
1 require("minfi", quietly = TRUE)
457c1fc71f64 Uploaded
testtool
parents:
diff changeset
2
457c1fc71f64 Uploaded
testtool
parents:
diff changeset
3 options(warn = -1)
457c1fc71f64 Uploaded
testtool
parents:
diff changeset
4 options("download.file.method"="wget")
457c1fc71f64 Uploaded
testtool
parents:
diff changeset
5
457c1fc71f64 Uploaded
testtool
parents:
diff changeset
6 args <- commandArgs(trailingOnly = TRUE)
457c1fc71f64 Uploaded
testtool
parents:
diff changeset
7 GSE = args[1]
457c1fc71f64 Uploaded
testtool
parents:
diff changeset
8 output = args[2]
457c1fc71f64 Uploaded
testtool
parents:
diff changeset
9
457c1fc71f64 Uploaded
testtool
parents:
diff changeset
10 GRset <- getGenomicRatioSetFromGEO(GSE)
457c1fc71f64 Uploaded
testtool
parents:
diff changeset
11
457c1fc71f64 Uploaded
testtool
parents:
diff changeset
12 save(GRset,file = output)