Mercurial > repos > testtool > get_gr_set

annotate GRsetFromGEO/GRsetFromGEO.R @ 33:ae82fab7c544 draft

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author testtool
date Sun, 23 Jul 2017 12:07:05 -0400
parents 296124126b94
children 88d2c717105e
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1 require("IlluminaHumanMethylation450kanno.ilmn12.hg19", quietly = TRUE)
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2 require("minfi", quietly = TRUE)
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4 options(warn = -1)
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5 options('download.file.method.GEOquery' = 'wget')
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6 options('GEOquery.inmemory.gpl'=FALSE)
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9 args <- commandArgs(trailingOnly = TRUE)
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10 input = args[1]
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11 output = args[2]
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13 GRset <- getGenomicRatioSetFromGEO(input)
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15 save(GRset,file = output)