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1 <tool id="getGRset" name="GRsetFromGEO">
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2 <description>downloads data from GEO</description>
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3 <command>Rscript $__tool_directory__/GRsetFromGEO.R $input output.RData</command>
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4 <inputs>
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5 <param format="text" name="input" type="text" value="" label="Enter GSE ID." help="e.g. 'GSE51547'"/>
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6 </inputs>
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7 <outputs>
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8 <data format="RDdata" name="output" label="output.RData" />
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9 </outputs>
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10 <help>
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11 **What it does**
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12 This R-based tool downloads data from GEO using getGEO from the GEOquery package and then returns a GenomicRatioSet object
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13 **Input**
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14 The GSE ID of the dataset to be downloaded from GEO "e.g. 'GSE51547'"
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15 **Output**
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16 GenomicRatioSet object
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17 </help>
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18 </tool>
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