Mercurial > repos > testtool > get_gr_set
annotate GRsetFromGEO.R @ 50:d793e03b4da1 draft
Uploaded
| author | testtool |
|---|---|
| date | Thu, 10 Aug 2017 06:19:14 -0400 |
| parents | |
| children |
| rev | line source |
|---|---|
| 50 | 1 require(minfi, quietly = TRUE) |
| 2 | |
| 3 options(warn = -1) | |
| 4 options('download.file.method.GEOquery' = 'wget') | |
| 5 options('GEOquery.inmemory.gpl'=FALSE) | |
| 6 | |
| 7 | |
| 8 args <- commandArgs(trailingOnly = TRUE) | |
| 9 input = args[1] | |
| 10 output = args[2] | |
| 11 | |
| 12 GRset <- getGenomicRatioSetFromGEO(input) | |
| 13 | |
| 14 save(GRset,file = output) | |
| 15 | |
| 16 |