Mercurial > repos > testtool > get_gr_set

comparison GRsetFromGEO.xml @ 23:1bdfe0d48de8 draft

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author testtool
date Mon, 10 Jul 2017 08:58:11 -0400
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22:71a8c9b37d45 23:1bdfe0d48de8
1 <tool id="getGRset" name="GRsetFromGEO">
2 <description>downloads data from GEO</description>
3 <command>Rscript $__tool_directory__/GRsetFromGEO.R $input output.RData</command>
4 <inputs>
5 <param format="text" name="input" type="text" value="" label="Enter GSE ID." help="e.g. 'GSE51547'"/>
6 </inputs>
7 <outputs>
8 <data format="RDdata" name="output" label="output.RData" />
9 </outputs>
10 <help>
11 **What it does**
12 This R-based tool downloads data from GEO using getGEO from the GEOquery package and then returns a GenomicRatioSet object
13 **Input**
14 The GSE ID of the dataset to be downloaded from GEO "e.g. 'GSE51547'"
15 **Output**
16 GenomicRatioSet object
17 </help>
18 </tool>