Mercurial > repos > testtool > get_gr_set

comparison getGRsetFromGEO/getGRsetFromGEO.R @ 0:457c1fc71f64 draft

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author testtool
date Sun, 11 Jun 2017 06:21:37 -0400
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-1:000000000000 0:457c1fc71f64
1 require("minfi", quietly = TRUE)
2
3 options(warn = -1)
4 options("download.file.method"="wget")
5
6 args <- commandArgs(trailingOnly = TRUE)
7 GSE = args[1]
8 output = args[2]
9
10 GRset <- getGenomicRatioSetFromGEO(GSE)
11
12 save(GRset,file = output)