Mercurial > repos > testtool > get_gr_set

comparison GRsetFromGEO/GRsetFromGEO.R @ 56:d7cf4a35f827 draft

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Uploaded
author testtool
date Thu, 10 Aug 2017 06:42:47 -0400
parents e23909ae6676
children 2382697aad09
comparison
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55:e23909ae6676 56:d7cf4a35f827
1 require(minfi, quietly = TRUE)
2
1 options(warn = -1) 3 options(warn = -1)
2 options('download.file.method.GEOquery' = 'wget')
3 options('GEOquery.inmemory.gpl'=FALSE)
4
5 4
6 args <- commandArgs(trailingOnly = TRUE) 5 args <- commandArgs(trailingOnly = TRUE)
7 input = args[1] 6 input = args[1]
8 output = args[2] 7 output = args[2]
9 8
10 GRset <- minfi::getGenomicRatioSetFromGEO(input) 9 GRset <- getGenomicRatioSetFromGEO(input)
11 10
12 save(GRset,file = output) 11 save(GRset,file = output)
13 12
14 13