Mercurial > repos > testtool > get_gr_set

comparison GRsetFromGEO/GRsetFromGEO.xml @ 35:f49921bb80eb draft

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author testtool
date Sun, 23 Jul 2017 12:36:50 -0400
parents 4b71f1bfc45e
children bee48babf30d
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34:4b71f1bfc45e 35:f49921bb80eb
1 <tool id="getGRset" name="GRsetFromGEO"> 1 <tool id="getGRset" name="GRsetFromGEO">
2 <description>downloads data from GEO</description> 2 <description>downloads data from GEO</description>
3 <requirements> 3 <requirements>
4 <requirement type="package" version="0.6.0">bioconductor-illuminahumanmethylation450kanno.ilmn12.hg19</requirement>
5 <requirement type="package" version="1.20.0">bioconductor-minfi</requirement> 4 <requirement type="package" version="1.20.0">bioconductor-minfi</requirement>
5 <requirement type="package" version="0.6.0">'bioconductor-illuminahumanmethylation450kanno.ilmn12.hg19'</requirement>
6 </requirements> 6 </requirements>
7 <stdio> 7 <stdio>
8 <exit_code range="1:" /> 8 <exit_code range="1:" />
9 </stdio> 9 </stdio>
10 <command>Rscript $__tool_directory__/GRsetFromGEO.R $input output.RData</command> 10 <command>Rscript $__tool_directory__/GRsetFromGEO.R $input output.RData</command>