Mercurial > repos > testtool > get_gr_set

diff GRsetFromGEO/GRsetFromGEO.R @ 61:2382697aad09 draft

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author testtool
date Thu, 11 Jan 2018 12:48:29 -0500
parents d7cf4a35f827
children
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--- a/GRsetFromGEO/GRsetFromGEO.R	Wed Sep 06 06:02:44 2017 -0400
+++ b/GRsetFromGEO/GRsetFromGEO.R	Thu Jan 11 12:48:29 2018 -0500
@@ -1,4 +1,8 @@
 require(minfi, quietly = TRUE)
+require(IlluminaHumanMethylation450kanno.ilmn12.hg19, quietly = TRUE)
+
+options('GEOquery.inmemory.gpl'=TRUE)
+options('download.file.method.GEOquery' = 'libcurl')
 
 options(warn = -1)
 
@@ -8,6 +12,5 @@
 
 GRset <- getGenomicRatioSetFromGEO(input)
 
-save(GRset,file = output)
+save(GRset, file = output)
 
-