Mercurial > repos > testtool > get_gr_set

diff GRsetFromGEO/GRsetFromGEO.xml @ 40:343324c86875 draft

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Uploaded
author testtool
date Mon, 07 Aug 2017 09:59:58 -0400
parents 10996f6ddcb5
children 3ee5ebb721ad
line wrap: on
line diff
--- a/GRsetFromGEO/GRsetFromGEO.xml	Mon Aug 07 09:53:59 2017 -0400
+++ b/GRsetFromGEO/GRsetFromGEO.xml	Mon Aug 07 09:59:58 2017 -0400
@@ -1,18 +1,18 @@
 <tool id="getGRset" name="GRsetFromGEO">
   <description>downloads data from GEO</description>
   <requirements>
-  <requirement type="package" version="1.20.0">bioconductor-minfi</requirement>
-  <requirement type="package" version="0.6.0">bioconductor-illuminahumanmethylation450kanno.ilmn12.hg19</requirement>
+<requirement type="package" version="1.20.0">bioconductor-minfi</requirement>
+<requirement type="package" version="0.6.0">bioconductor-illuminahumanmethylation450kanno.ilmn12.hg19</requirement>
   </requirements>
   <stdio>
   <exit_code range="1:" />
   </stdio>
-  <command>Rscript $__tool_directory__/GRsetFromGEO.R $input output.RData</command>
+  <command>Rscript $__tool_directory__/GRsetFromGEO.R $input output.rdata</command>
   <inputs>
     <param format="text" name="input" type="text" value="" label="Enter GSE ID." help="e.g. 'GSE51547'"/>
   </inputs>
   <outputs>
-    <data format="RDdata" name="output" label="output.RData" />
+    <data format="rdata" name="output" label="output.rdata" />
   </outputs>
   <help>
     **What it does**