Mercurial > repos > testtool > get_gr_set

diff GRsetFromGEO/.Rhistory @ 5:7511130b5068 draft

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author testtool
date Sun, 11 Jun 2017 07:49:41 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/GRsetFromGEO/.Rhistory	Sun Jun 11 07:49:41 2017 -0400
@@ -0,0 +1,16 @@
+require("minfi", quietly = TRUE)
+?require
+require("minfi", quietly = TRUE)
+minfi
+as.data.frame(GRset)
+GRset <- getGenomicRatioSetFromGEO(GSE)
+getGenomicRatioSetFromGEO
+require("minfi", quietly = TRUE)
+options(warn = -1)
+options("download.file.method"="wget")
+args <- commandArgs(trailingOnly = TRUE)
+GSE = args[1]
+output = args[2]
+GRset <- getGenomicRatioSetFromGEO(GSE)
+save(GRset,file = output)
+sessionInfo()