Mercurial > repos > testtool > get_gr_set

diff GRsetFromGEO/GRsetFromGEO.R @ 38:88d2c717105e draft

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Uploaded
author testtool
date Mon, 24 Jul 2017 10:39:43 -0400
parents ae82fab7c544
children 05f6acc80f47
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line diff
--- a/GRsetFromGEO/GRsetFromGEO.R	Mon Jul 24 10:39:17 2017 -0400
+++ b/GRsetFromGEO/GRsetFromGEO.R	Mon Jul 24 10:39:43 2017 -0400
@@ -1,6 +1,3 @@
-require("IlluminaHumanMethylation450kanno.ilmn12.hg19", quietly = TRUE)
-require("minfi", quietly = TRUE)
-
 options(warn = -1)
 options('download.file.method.GEOquery' = 'wget')
 options('GEOquery.inmemory.gpl'=FALSE)
@@ -9,7 +6,8 @@
 args <- commandArgs(trailingOnly = TRUE)
 input = args[1] 
 output = args[2] 
-
+input <- 'GSE51547'
 GRset <- getGenomicRatioSetFromGEO(input)
 
 save(GRset,file = output)
+