Mercurial > repos > testtool > get_gr_set

diff GRsetFromGEO.R @ 50:d793e03b4da1 draft

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author testtool
date Thu, 10 Aug 2017 06:19:14 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/GRsetFromGEO.R	Thu Aug 10 06:19:14 2017 -0400
@@ -0,0 +1,16 @@
+require(minfi, quietly = TRUE)
+
+options(warn = -1)
+options('download.file.method.GEOquery' = 'wget')
+options('GEOquery.inmemory.gpl'=FALSE)
+
+
+args <- commandArgs(trailingOnly = TRUE)
+input = args[1] 
+output = args[2] 
+
+GRset <- getGenomicRatioSetFromGEO(input)
+
+save(GRset,file = output)
+
+