Mercurial > repos > testtool > get_gr_set

diff GRsetFromGEO/GRsetFromGEO.R @ 55:e23909ae6676 draft

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author testtool
date Thu, 10 Aug 2017 06:26:46 -0400
parents 5752f23e451f
children d7cf4a35f827
line wrap: on
line diff
--- a/GRsetFromGEO/GRsetFromGEO.R	Thu Aug 10 06:20:22 2017 -0400
+++ b/GRsetFromGEO/GRsetFromGEO.R	Thu Aug 10 06:26:46 2017 -0400
@@ -1,5 +1,3 @@
-require(minfi, quietly = TRUE)
-
 options(warn = -1)
 options('download.file.method.GEOquery' = 'wget')
 options('GEOquery.inmemory.gpl'=FALSE)
@@ -9,7 +7,7 @@
 input = args[1] 
 output = args[2] 
 
-GRset <- getGenomicRatioSetFromGEO(input)
+GRset <- minfi::getGenomicRatioSetFromGEO(input)
 
 save(GRset,file = output)