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view GRsetFromGEO/GRsetFromGEO.R @ 17:3431c6054674 draft

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author testtool
date Thu, 29 Jun 2017 11:10:41 -0400
parents ceaf71c74547
children 07f0fc6e4d1d
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require("minfi", quietly = TRUE)

options(warn = -1)
options('download.file.method.GEOquery'='auto')
options('GEOquery.inmemory.gpl'=TRUE)


args <- commandArgs(trailingOnly = TRUE)
input = args[1] 
output = args[2] 

GRset <- getGenomicRatioSetFromGEO(input)

save(GRset,file = output)