Mercurial > repos > testtool > get_gr_set
view GRsetFromGEO/GRsetFromGEO.R @ 41:3ee5ebb721ad draft
Uploaded
author | testtool |
---|---|
date | Mon, 07 Aug 2017 10:06:06 -0400 |
parents | 05f6acc80f47 |
children | fe7d4d8591c5 |
line wrap: on
line source
require(minfi, quietly = TRUE) require(IlluminaHumanMethylation450kanno.ilmn12.hg19, quietly = TRUE) options(warn = -1) options('download.file.method.GEOquery' = 'wget') options('GEOquery.inmemory.gpl'=FALSE) args <- commandArgs(trailingOnly = TRUE) input = args[1] output = args[2] GRset <- getGenomicRatioSetFromGEO(input) save(GRset,file = output)