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view GRsetFromGEO/GRsetFromGEO.R @ 33:ae82fab7c544 draft

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author testtool
date Sun, 23 Jul 2017 12:07:05 -0400
parents 296124126b94
children 88d2c717105e
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require("IlluminaHumanMethylation450kanno.ilmn12.hg19", quietly = TRUE)
require("minfi", quietly = TRUE)

options(warn = -1)
options('download.file.method.GEOquery' = 'wget')
options('GEOquery.inmemory.gpl'=FALSE)


args <- commandArgs(trailingOnly = TRUE)
input = args[1] 
output = args[2] 

GRset <- getGenomicRatioSetFromGEO(input)

save(GRset,file = output)