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view GRsetFromGEO/GRsetFromGEO.R @ 45:ddf8f48d1a37 draft

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author testtool
date Tue, 08 Aug 2017 09:16:28 -0400
parents fe7d4d8591c5
children 5752f23e451f
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require(minfi, quietly = TRUE)
require(IlluminaHumanMethylation450kanno.ilmn12.hg19, quietly = TRUE)

options(warn = -1)
options('download.file.method.GEOquery' = 'wget')
options('GEOquery.inmemory.gpl'=FALSE)


args <- commandArgs(trailingOnly = TRUE)
input = args[1] 
output = args[2] 

GRset <- minfi::getGenomicRatioSetFromGEO(input)

save(GRset,file = output)

??getGenomicRatioSetFromGEO