# HG changeset patch
# User testtool
# Date 1499080423 14400
# Node ID 0a619d0e45fd0b67961a04e34f57b011fcd571d7
# Parent  25490621d43e1be2d16cd216963fc9fb6c8e4417
Deleted selected files

diff -r 25490621d43e -r 0a619d0e45fd GRsetFromGEO.xml
--- a/GRsetFromGEO.xml	Mon Jul 03 07:13:38 2017 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,39 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<tool id="GetGEO" name="GRsetFromGEO" version="1.16.2">
-<requirements>
-<requirement type="package" version="1.20.0">bioconductor-minfi</requirement>
-</requirements>
-<stdio>
-<exit_code range="1:" />
-</stdio>
-  <command> Rscript $__tool_directory__/GRsetFromGEO.R "$input" "$output" </command>
-  <inputs>
-     <param name="input" type="text" value="" label="Enter GSE ID." help="e.g. 'GSE51547'"/>
-  </inputs>
-  <outputs>
-    <data format="RDdata" name="output" label="GRsetFromGEO.RData"/>
-  </outputs>
-  <tests>
-    <test>
-      <param name="test">
-      <element name="test-data">
-          <collection type="data">
-                <element name="input" value="GSE51547"/>
-          </collection>
-        </element>
-        </param>
-        <output type="data" format="RData"  name="output" label="test-data/out.RData"/>
-        </test>
-    </tests>
-  <help>
-**What it does**
-This R-based tool downloads data from GEO using getGEO from the GEOquery package and then returns a GenomicRatioSet object
-**Input**
-The GSE ID of the dataset to be downloaded from GEO "e.g. 'GSE51547'"
-**Output**
-GenomicRatioSet object
-  </help>
-  <citations>
-<citation type="doi">10.1093/bioinformatics/btu049</citation>
-  </citations>
-</tool>