# HG changeset patch
# User testtool
# Date 1502360388 14400
# Node ID 5547aeb4ff23b58a5bcafa79715553ac2ed3851b
# Parent  d6c7c3ed3290bdf60e4fd224148f5a29c5fcfb11
Deleted selected files

diff -r d6c7c3ed3290 -r 5547aeb4ff23 GRsetFromGEO/test-data/GRsetFromGEO.R
--- a/GRsetFromGEO/test-data/GRsetFromGEO.R	Thu Aug 10 06:19:36 2017 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,16 +0,0 @@
-require(minfi, quietly = TRUE)
-
-options(warn = -1)
-options('download.file.method.GEOquery' = 'wget')
-options('GEOquery.inmemory.gpl'=FALSE)
-
-
-args <- commandArgs(trailingOnly = TRUE)
-input = args[1] 
-output = args[2] 
-
-GRset <- getGenomicRatioSetFromGEO(input)
-
-save(GRset,file = output)
-
-
diff -r d6c7c3ed3290 -r 5547aeb4ff23 GRsetFromGEO/test-data/GRsetFromGEO.xml
--- a/GRsetFromGEO/test-data/GRsetFromGEO.xml	Thu Aug 10 06:19:36 2017 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,24 +0,0 @@
-<tool id="getGRset" name="GRsetFromGEO">
-  <description>downloads data from GEO</description>
-  <requirements>
-<requirement type="package" version="1.20.0">bioconductor-minfi</requirement>
-  </requirements>
-  <stdio>
-  <exit_code range="1:" />
-  </stdio>
-  <command>Rscript $__tool_directory__/GRsetFromGEO.R "$input" "$output"</command>
-  <inputs>
-    <param format="text" name="input" type="text" value="" label="Enter GSE ID." help="e.g. 'GSE51547'"/>
-  </inputs>
-  <outputs>
-    <data format="rdata" name="output" label="output.rdata" />
-  </outputs>
-  <help>
-    **What it does**
-    This R-based tool downloads data from GEO using getGEO from the GEOquery package and then returns a GenomicRatioSet object
-    **Input**
-    The GSE ID of the dataset to be downloaded from GEO "e.g. 'GSE51547'"
-    **Output**
-    GenomicRatioSet object
-  </help>
-</tool>