# HG changeset patch # User testtool # Date 1502360376 14400 # Node ID d6c7c3ed3290bdf60e4fd224148f5a29c5fcfb11 # Parent 55c57fa3f67956c20ebbf6d9b820d898798762c5 Uploaded diff -r 55c57fa3f679 -r d6c7c3ed3290 GRsetFromGEO/test-data/GRsetFromGEO.R --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/GRsetFromGEO/test-data/GRsetFromGEO.R Thu Aug 10 06:19:36 2017 -0400 @@ -0,0 +1,16 @@ +require(minfi, quietly = TRUE) + +options(warn = -1) +options('download.file.method.GEOquery' = 'wget') +options('GEOquery.inmemory.gpl'=FALSE) + + +args <- commandArgs(trailingOnly = TRUE) +input = args[1] +output = args[2] + +GRset <- getGenomicRatioSetFromGEO(input) + +save(GRset,file = output) + +