# HG changeset patch
# User testtool
# Date 1502361767 14400
# Node ID d7cf4a35f8271ec4ffe59633b0168cc19de70426
# Parent  e23909ae66768e9ce6f597717e1bf24d75c6cbd8
Uploaded

diff -r e23909ae6676 -r d7cf4a35f827 GRsetFromGEO/GRsetFromGEO.R
--- a/GRsetFromGEO/GRsetFromGEO.R	Thu Aug 10 06:26:46 2017 -0400
+++ b/GRsetFromGEO/GRsetFromGEO.R	Thu Aug 10 06:42:47 2017 -0400
@@ -1,13 +1,12 @@
+require(minfi, quietly = TRUE)
+
 options(warn = -1)
-options('download.file.method.GEOquery' = 'wget')
-options('GEOquery.inmemory.gpl'=FALSE)
-
 
 args <- commandArgs(trailingOnly = TRUE)
 input = args[1] 
 output = args[2] 
 
-GRset <- minfi::getGenomicRatioSetFromGEO(input)
+GRset <- getGenomicRatioSetFromGEO(input)
 
 save(GRset,file = output)