# HG changeset patch # User testtool # Date 1502360806 14400 # Node ID e23909ae66768e9ce6f597717e1bf24d75c6cbd8 # Parent 5752f23e451ff39c4e74a3eb9cb614edc0717bb7 Uploaded diff -r 5752f23e451f -r e23909ae6676 GRsetFromGEO/GRsetFromGEO.R --- a/GRsetFromGEO/GRsetFromGEO.R Thu Aug 10 06:20:22 2017 -0400 +++ b/GRsetFromGEO/GRsetFromGEO.R Thu Aug 10 06:26:46 2017 -0400 @@ -1,5 +1,3 @@ -require(minfi, quietly = TRUE) - options(warn = -1) options('download.file.method.GEOquery' = 'wget') options('GEOquery.inmemory.gpl'=FALSE) @@ -9,7 +7,7 @@ input = args[1] output = args[2] -GRset <- getGenomicRatioSetFromGEO(input) +GRset <- minfi::getGenomicRatioSetFromGEO(input) save(GRset,file = output)