Mercurial > repos > testtool > get_gr_set

changeset 54:5752f23e451f draft

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Uploaded
author testtool
date Thu, 10 Aug 2017 06:20:22 -0400
parents 5547aeb4ff23
children e23909ae6676
files GRsetFromGEO/GRsetFromGEO.R
diffstat 1 files changed, 2 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/GRsetFromGEO/GRsetFromGEO.R	Thu Aug 10 06:19:48 2017 -0400
+++ b/GRsetFromGEO/GRsetFromGEO.R	Thu Aug 10 06:20:22 2017 -0400
@@ -1,5 +1,4 @@
 require(minfi, quietly = TRUE)
-require(IlluminaHumanMethylation450kanno.ilmn12.hg19, quietly = TRUE)
 
 options(warn = -1)
 options('download.file.method.GEOquery' = 'wget')
@@ -10,8 +9,8 @@
 input = args[1] 
 output = args[2] 
 
-GRset <- minfi::getGenomicRatioSetFromGEO(input)
+GRset <- getGenomicRatioSetFromGEO(input)
 
 save(GRset,file = output)
 
-??getGenomicRatioSetFromGEO
+