Mercurial > repos > testtool > get_gr_set

changeset 13:6f7428f907da draft

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Uploaded
author testtool
date Wed, 14 Jun 2017 12:07:05 -0400
parents 49fb5138448c
children c3b28b232e64
files GRsetFromGEO/GRsetFromGEO.R GRsetFromGEO/GRsetFromGEO.xml
diffstat 2 files changed, 1 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/GRsetFromGEO/GRsetFromGEO.R	Wed Jun 14 11:58:44 2017 -0400
+++ b/GRsetFromGEO/GRsetFromGEO.R	Wed Jun 14 12:07:05 2017 -0400
@@ -1,6 +1,5 @@
-require("minfi", quietly = TRUE)
-
 options(warn = -1)
+options('download.file.method'='auto')
 
 args <- commandArgs(trailingOnly = TRUE)
 GSE = args[1] 
--- a/GRsetFromGEO/GRsetFromGEO.xml	Wed Jun 14 11:58:44 2017 -0400
+++ b/GRsetFromGEO/GRsetFromGEO.xml	Wed Jun 14 12:07:05 2017 -0400
@@ -1,7 +1,6 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <tool id="GetGEO" name="GRsetFromGEO" version="1.16.2">
 <requirements>
-<requirement type="package" version="1.20.0">gnu-wget</requirement>
 <requirement type="package" version="1.20.0">bioconductor-minfi</requirement>
 </requirements>
 <stdio>