Mercurial > repos > testtool > get_gr_set

changeset 26:b003e02d1ea4 draft

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author testtool
date Mon, 10 Jul 2017 08:58:28 -0400
parents b2a0cc48c838
children d492a31c50f1
files GRsetFromGEO.xml
diffstat 1 files changed, 0 insertions(+), 18 deletions(-) [+]
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line diff
--- a/GRsetFromGEO.xml	Mon Jul 10 08:58:24 2017 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,18 +0,0 @@
-<tool id="getGRset" name="GRsetFromGEO">
-  <description>downloads data from GEO</description>
-  <command>Rscript $__tool_directory__/GRsetFromGEO.R $input output.RData</command>
-  <inputs>
-    <param format="text" name="input" type="text" value="" label="Enter GSE ID." help="e.g. 'GSE51547'"/>
-  </inputs>
-  <outputs>
-    <data format="RDdata" name="output" label="output.RData" />
-  </outputs>
-  <help>
-    **What it does**
-    This R-based tool downloads data from GEO using getGEO from the GEOquery package and then returns a GenomicRatioSet object
-    **Input**
-    The GSE ID of the dataset to be downloaded from GEO "e.g. 'GSE51547'"
-    **Output**
-    GenomicRatioSet object
-  </help>
-</tool>