|
8
|
1 <tool id="GSM" name="getGSMdata" version="1.16.2">
|
|
|
2 <requirements>
|
|
10
|
3 <tool_dependency>
|
|
|
4 <package name="methyldata_1_16_2" version="1.16.2">
|
|
|
5 <repository name="methyldata_1_16_2" owner="testtool" prior_installation_required="True" />
|
|
|
6 </package>
|
|
|
7 </tool_dependency>
|
|
8
|
8 </requirements>
|
|
|
9 <stdio>
|
|
|
10 <exit_code range="1:" />
|
|
|
11 </stdio>
|
|
|
12 <command> Rscript $__tool_directory__/getGSMdata.R "$GSE" "$GSMTable" </command>
|
|
|
13 <inputs>
|
|
|
14 <param name="GSE" type="text" value="" label="Enter GSE ID." help="e.g. 'GSE51547'"/>
|
|
|
15 </inputs>
|
|
|
16 <outputs>
|
|
|
17 <data format="txt" name="GSMTable" label="GSMTable.txt"/>
|
|
|
18 </outputs>
|
|
|
19 <tests>
|
|
|
20 <test>
|
|
|
21 <param name="test">
|
|
|
22 <element name="test-data">
|
|
|
23 <collection type="data">
|
|
|
24 <element name="GSE" value="GSE51547"/>
|
|
|
25 </collection>
|
|
|
26 </element>
|
|
|
27 </param>
|
|
|
28 <output format="txt" name="GSMTable" label="test-data/GSMTable.txt"/>
|
|
|
29 </test>
|
|
|
30 </tests>
|
|
|
31 <help>
|
|
|
32 **Description**
|
|
|
33 </help>
|
|
|
34 <citations>
|
|
|
35 GEO
|
|
|
36 </citations>
|
|
|
37 </tool>
|
