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1 <tool id="GSM" name="getGSMdata" version="1.16.2">
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2 <requirements>
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3 <requirement type="package" version="1.1.0">r-rentrez</requirement>
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4 </requirements>
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5 <stdio>
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6 <exit_code range="1:" />
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7 </stdio>
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8 <command> Rscript $__tool_directory__/getGSMdata.R "$GSE" "$GSMTable" </command>
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9 <inputs>
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10 <param name="GSE" type="text" value="" label="Enter GSE ID." help="e.g. 'GSE51547'"/>
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11 </inputs>
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12 <outputs>
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13 <data format="txt" name="GSMTable" label="GSMTable.txt"/>
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14 </outputs>
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15 <tests>
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16 <test>
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17 <param name="test">
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18 <element name="test-data">
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19 <collection type="data">
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20 <element name="GSE" value="GSE51547"/>
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21 </collection>
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22 </element>
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23 </param>
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24 <output format="txt" name="GSMTable" label="test-data/GSMTable.txt"/>
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25 </test>
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26 </tests>
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25
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27 <help>
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28 **Description**
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29 </help>
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30 <citations>
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31 GEO
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32 </citations>
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33 </tool>
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