Mercurial > repos > testtool > get_gsm

comparison getGSMdata/getGSMdata.xml @ 8:5e1d49abfc99 draft

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author testtool
date Mon, 06 Feb 2017 05:17:56 -0500
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7:3eb1073638d7 8:5e1d49abfc99
1 <tool id="GSM" name="getGSMdata" version="1.16.2">
2 <requirements>
3 <tool_dependency>
4 <package name="methyldata_1_16_2" version="1.16.2">
5 <repository name="methyldata_1_16_2" owner="testtool" prior_installation_required="True" />
6 </package>
7 </tool_dependency>
8 </requirements>
9 <stdio>
10 <exit_code range="1:" />
11 </stdio>
12 <command> Rscript $__tool_directory__/getGSMdata.R "$GSE" "$GSMTable" </command>
13 <inputs>
14 <param name="GSE" type="text" value="" label="Enter GSE ID." help="e.g. 'GSE51547'"/>
15 </inputs>
16 <outputs>
17 <data format="txt" name="GSMTable" label="GSMTable.txt"/>
18 </outputs>
19 <tests>
20 <test>
21 <param name="test">
22 <element name="test-data">
23 <collection type="data">
24 <element name="GSE" value="GSE51547"/>
25 </collection>
26 </element>
27 </param>
28 <output format="txt" name="GSMTable" label="test-data/GSMTable.txt"/>
29 </test>
30 </tests>
31 <help>
32 **Description**
33 </help>
34 <citations>
35 GEO
36 </citations>
37 </tool>