Mercurial > repos > testtool > get_gsm
diff getGSMdata.xml @ 2:7c896d0c6119 draft
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author | testtool |
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date | Mon, 06 Feb 2017 05:07:31 -0500 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/getGSMdata.xml Mon Feb 06 05:07:31 2017 -0500 @@ -0,0 +1,37 @@ +<tool id="GSM" name="getGSMdata" version="1.16.2"> + <requirements> +<tool_dependency> + <package name="methyldata_1_16_2" version="1.16.2"> + <repository name="methyldata_1_16_2" owner="testtool" prior_installation_required="True" /> + </package> +</tool_dependency> +</requirements> +<stdio> + <exit_code range="1:" /> +</stdio> + <command> Rscript $__tool_directory__/getGSMdata.R "$GSE" "$GSMTable" </command> + <inputs> + <param name="GSE" type="text" value="" label="Enter GSE ID." help="e.g. 'GSE51547'"/> + </inputs> + <outputs> + <data format="txt" name="GSMTable" label="GSMTable.txt"/> + </outputs> + <tests> + <test> + <param name="test"> + <element name="test-data"> + <collection type="data"> + <element name="GSE" value="GSE51547"/> + </collection> + </element> + </param> + <output format="txt" name="GSMTable" label="test-data/GSMTable.txt"/> + </test> + </tests> + <help> +**Description** +</help> +<citations> +GEO +</citations> +</tool>