Mercurial > repos > testtool > get_gsm
diff getGSMdata/geo_data-05050b50d4f8/GEO/getGEO.xml @ 26:ac5415190777 draft
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author | testtool |
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date | Wed, 15 Feb 2017 10:21:18 -0500 |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/getGSMdata/geo_data-05050b50d4f8/GEO/getGEO.xml Wed Feb 15 10:21:18 2017 -0500 @@ -0,0 +1,39 @@ +<tool id="GEO" name="getGEO" version="1.16.2"> + <requirements> + <requirement type="package" version="3.2.1">R</requirement> + </requirements> +<stdio> + <exit_code range="1:" /> + </stdio> + <command> Rscript $__tool_directory__/getGEO.R "$GSMTable" "$MetaTable" "$IlmnTable" "$gmTable"</command> + <inputs> + <param optional="false" format="csv" name="GSMTable" type="data" value="" help="GEO table of data." label="[required] GSMTable"> + <validator type="empty_field" message="This field is required."/> + </param> + </inputs> + <outputs> + <data format="csv" name="MetaTable" label="MetaData.csv"/> + <data format="csv" name="IlmnTable" label="IlmnData.csv"/> + <data format="csv" name="gmTable" label="gmSet.csv"/> + </outputs> + <tests> + <test> + <param name="test"> + <element name="test-data"> + <collection type="data"> + <element name="GSMTable" value="test-data/input.csv" /> + </collection> + </element> + </param> + <output format="csv" name="MetaTable" label="test-data/MetaTable.csv"/> + <output format="csv" name="IlmnTable" label="test-data/IlmnTable.csv"/> + <output format="csv" name="gmTable" label="test-data/gmTable.csv"/> + </test> + </tests> + <help> +**Description** +</help> +<citations> +GEO +</citations> +</tool>