comparison biotradis_plot.xml @ 7:09c1f97a5bcc draft

"planemo upload for repository https://github.com/quadram-institute-bioscience/galaxy-tools/tree/master/tools/biotradis commit 1c12becfd708c0635632ab92620a846764ec4559-dirty"
author thanhlv
date Fri, 06 Dec 2019 10:11:20 -0500
parents afe9a515d145
children
comparison
equal deleted inserted replaced
6:5506c4307812 7:09c1f97a5bcc
6 <expand macro="requirements" /> 6 <expand macro="requirements" />
7 <command detect_errors="exit_code"><![CDATA[ 7 <command detect_errors="exit_code"><![CDATA[
8 8
9 tradis_plot -b $input_bam -m $mapping_quality 9 tradis_plot -b $input_bam -m $mapping_quality
10 10
11 ]]></command> 11 ]]> </command>
12 <inputs> 12 <inputs>
13 <param name="input_bam" type="data" format="bam" label="BAM file" help="" /> 13 <param name="input_bam" type="data" format="bam" label="BAM file" />
14 <param name="mapping_quality" type="integer" value="30" label="mapping quality must be greater than X " help="(optional. default: 30)" /> 14 <param name="mapping_quality" type="integer" min="0" value="30" label="mapping quality must be greater than X " />
15 </inputs> 15 </inputs>
16 16
17 <outputs> 17 <outputs>
18 <data name="output_bam" format="bam" label="${tool.name} on ${on_string}" from_work_dir="added.tr.bam" /> 18 <data name="output_bam" format="bam" label="${tool.name} on ${on_string} Plot" from_work_dir="tradis.plot" />
19 </outputs> 19 </outputs>
20 20
21 <tests> 21 <tests>
22 </tests> 22 </tests>
23 <help><![CDATA[ 23 <help><![CDATA[
27 Usage: add_tags -b file.bam [options] 27 Usage: add_tags -b file.bam [options]
28 28
29 Options: 29 Options:
30 -b : bam file with tradis tags 30 -b : bam file with tradis tags
31 -v : verbose debugging output 31 -v : verbose debugging output
32 ]]></help> 32 ]]> </help>
33 <expand macro="citations" />
33 34
34 </tool> 35 </tool>