Mercurial > repos > thanhlv > biotradis
comparison biotradis_plot.xml @ 7:09c1f97a5bcc draft
"planemo upload for repository https://github.com/quadram-institute-bioscience/galaxy-tools/tree/master/tools/biotradis commit 1c12becfd708c0635632ab92620a846764ec4559-dirty"
author | thanhlv |
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date | Fri, 06 Dec 2019 10:11:20 -0500 |
parents | afe9a515d145 |
children |
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6:5506c4307812 | 7:09c1f97a5bcc |
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6 <expand macro="requirements" /> | 6 <expand macro="requirements" /> |
7 <command detect_errors="exit_code"><![CDATA[ | 7 <command detect_errors="exit_code"><![CDATA[ |
8 | 8 |
9 tradis_plot -b $input_bam -m $mapping_quality | 9 tradis_plot -b $input_bam -m $mapping_quality |
10 | 10 |
11 ]]></command> | 11 ]]> </command> |
12 <inputs> | 12 <inputs> |
13 <param name="input_bam" type="data" format="bam" label="BAM file" help="" /> | 13 <param name="input_bam" type="data" format="bam" label="BAM file" /> |
14 <param name="mapping_quality" type="integer" value="30" label="mapping quality must be greater than X " help="(optional. default: 30)" /> | 14 <param name="mapping_quality" type="integer" min="0" value="30" label="mapping quality must be greater than X " /> |
15 </inputs> | 15 </inputs> |
16 | 16 |
17 <outputs> | 17 <outputs> |
18 <data name="output_bam" format="bam" label="${tool.name} on ${on_string}" from_work_dir="added.tr.bam" /> | 18 <data name="output_bam" format="bam" label="${tool.name} on ${on_string} Plot" from_work_dir="tradis.plot" /> |
19 </outputs> | 19 </outputs> |
20 | 20 |
21 <tests> | 21 <tests> |
22 </tests> | 22 </tests> |
23 <help><![CDATA[ | 23 <help><![CDATA[ |
27 Usage: add_tags -b file.bam [options] | 27 Usage: add_tags -b file.bam [options] |
28 | 28 |
29 Options: | 29 Options: |
30 -b : bam file with tradis tags | 30 -b : bam file with tradis tags |
31 -v : verbose debugging output | 31 -v : verbose debugging output |
32 ]]></help> | 32 ]]> </help> |
33 <expand macro="citations" /> | |
33 | 34 |
34 </tool> | 35 </tool> |