Mercurial > repos > thanhlv > biotradis
view biotradis_check_tags.xml @ 4:7366ea56a6f3 draft
planemo upload for repository https://github.com/quadram-institute-bioscience/galaxy-tools/tree/master/tools/biotradis commit 2e1b1f737f3a3d7cfc6350c6936fbb0bd84a5dad-dirty
author | thanhlv |
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date | Thu, 25 Jul 2019 06:16:18 -0400 |
parents | afe9a515d145 |
children | 09c1f97a5bcc |
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<tool id="check_tradis_tags" name="check tradis tags" version="@VERSION@"> <description>Check for the existence of tradis tags in a bam</description> <macros> <import>macros.xml</import> </macros> <expand macro="requirements" /> <command detect_errors="exit_code"><![CDATA[ check_tradis_tags -b $input_bam > $output ]]></command> <inputs> <param name="input_bam" type="data" format="bam" label="BAM file" help="" /> </inputs> <outputs> <data name="output" format="tabular" label="${tool.name} on ${on_string}" from_work_dir="$output" /> </outputs> <!-- <tests> </tests> --> <help><![CDATA[ Adds transposon sequence and quality tags to the read strings and outputs a BAM. Usage: add_tags -b file.bam [options] Options: -b : bam file with tradis tags -v : verbose debugging output ]]></help> </tool>