Mercurial > repos > thanhlv > fargene

diff test-data/paired/hmmsearchresults/contigs-class_B_1_2-hmmsearched.out @ 0:6f78bc71eb12 draft default tip

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planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/fargene commit 2e1b1f737f3a3d7cfc6350c6936fbb0bd84a5dad-dirty
author thanhlv
date Fri, 19 Jul 2019 08:42:37 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/paired/hmmsearchresults/contigs-class_B_1_2-hmmsearched.out	Fri Jul 19 08:42:37 2019 -0400
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+#                                                                                               --- full sequence --- -------------- this domain -------------   hmm coord   ali coord   env coord
+# target name                     accession   tlen query name                 accession   qlen   E-value  score  bias   #  of  c-Evalue  i-Evalue  score  bias  from    to  from    to  from    to  acc description of target
+#             ------------------- ---------- -----       -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- ---------------------
+NODE_1_length_935_cov_39.160227_6 -            312 b1_b2_70_centroids-aligned -            248     5e-84  270.2   0.0   1   1     1e-84   6.1e-84  269.9   0.0     7   244    19   270    12   272 0.94 -
+#
+# Program:         hmmsearch
+# Version:         3.2.1 (June 2018)
+# Pipeline mode:   SEARCH
+# Query file:      /home/ubuntu/data/miniconda2/envs/fargene/lib/python2.7/site-packages/fargene_analysis/models/class_B_1_2.hmm
+# Target file:     /home/ubuntu/data/fargene/tutorial/tutorialdata/tutorial_output_1/tmpdir/contigs-translated.fasta
+# Option settings: hmmsearch --domtblout /home/ubuntu/data/fargene/tutorial/tutorialdata/tutorial_output_1/hmmsearchresults/contigs-class_B_1_2-hmmsearched.out -E 1000 --domE 1000 /home/ubuntu/data/miniconda2/envs/fargene/lib/python2.7/site-packages/fargene_analysis/models/class_B_1_2.hmm /home/ubuntu/data/fargene/tutorial/tutorialdata/tutorial_output_1/tmpdir/contigs-translated.fasta 
+# Current dir:     /home/ubuntu/data/fargene/tutorial/tutorialdata
+# Date:            Tue Jul 16 12:47:14 2019
+# [ok]