--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/paired/retrievedFragments/trimmedReads/reads__1_retrieved.fastq_trimming_report.txt	Fri Jul 19 08:42:37 2019 -0400
@@ -0,0 +1,58 @@
+
+SUMMARISING RUN PARAMETERS
+==========================
+Input filename: /home/ubuntu/data/fargene/tutorial/tutorialdata/tutorial_output_1/retrievedFragments/reads__1_retrieved.fastq
+Trimming mode: paired-end
+Trim Galore version: 0.6.3
+Cutadapt version: 1.18
+Number of cores used for trimming: 1
+Quality Phred score cutoff: 30
+Quality encoding type selected: ASCII+33
+Adapter sequence: 'AGATCGGAAGAGC' (Illumina TruSeq, Sanger iPCR; default (inconclusive auto-detection))
+Maximum trimming error rate: 0.1 (default)
+Minimum required adapter overlap (stringency): 1 bp
+Minimum required sequence length for both reads before a sequence pair gets removed: 20 bp
+
+
+This is cutadapt 1.18 with Python 2.7.15
+Command line parameters: -j 1 -e 0.1 -q 30 -O 1 -a AGATCGGAAGAGC /home/ubuntu/data/fargene/tutorial/tutorialdata/tutorial_output_1/retrievedFragments/reads__1_retrieved.fastq
+Processing reads on 1 core in single-end mode ...
+Finished in 0.01 s (27 us/read; 2.19 M reads/minute).
+
+=== Summary ===
+
+Total reads processed:                     393
+Reads with adapters:                       102 (26.0%)
+Reads written (passing filters):           393 (100.0%)
+
+Total basepairs processed:        39,300 bp
+Quality-trimmed:                     156 bp (0.4%)
+Total written (filtered):         39,001 bp (99.2%)
+
+=== Adapter 1 ===
+
+Sequence: AGATCGGAAGAGC; Type: regular 3'; Length: 13; Trimmed: 102 times.
+
+No. of allowed errors:
+0-9 bp: 0; 10-13 bp: 1
+
+Bases preceding removed adapters:
+  A: 24.5%
+  C: 35.3%
+  G: 31.4%
+  T: 8.8%
+  none/other: 0.0%
+
+Overview of removed sequences
+length	count	expect	max.err	error counts
+1	72	98.2	0	72
+2	24	24.6	0	24
+3	3	6.1	0	3
+4	2	1.5	0	2
+6	1	0.1	0	1
+
+
+RUN STATISTICS FOR INPUT FILE: /home/ubuntu/data/fargene/tutorial/tutorialdata/tutorial_output_1/retrievedFragments/reads__1_retrieved.fastq
+=============================================
+393 sequences processed in total
+