Mercurial > repos > thanhlv > humann3
comparison test-data/demo-taxonomic-profile.tabular @ 0:ab86614989fd draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/humann commit 6b06711cfba45855d5a992ed1c73c472eaef644f
| author | thanhlv |
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| date | Mon, 13 Feb 2023 16:16:49 +0000 |
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| -1:000000000000 | 0:ab86614989fd |
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| 1 #full-db | |
| 2 #metaphlan in --input_type fasta --read_min_len 70 --bt2_ps very-sensitive --min_mapq_val 5 --bowtie2db test-data/test-db/metaphlan-db --index demo-db-v30 -t rel_ab --tax_lev a --min_cu_len 2000 --add_viruses --stat_q 0.2 --perc_nonzero 0.33 --avoid_disqm --sample_id_key SampleID --sample_id Metaphlan_Analysis -o /tmp/tmp7hcectnz/files/000/dataset_2.dat --bowtie2out bowtie2out -s /tmp/tmp7hcectnz/files/000/dataset_4.dat --biom /tmp/tmp7hcectnz/files/000/dataset_5.dat --nproc 1 | |
| 3 #SampleID Metaphlan_Analysis | |
| 4 #clade_name NCBI_tax_id relative_abundance additional_species | |
| 5 k__Bacteria 2 100.0 | |
| 6 k__Bacteria|p__Bacteroidetes 2|976 100.0 | |
| 7 k__Bacteria|p__Bacteroidetes|c__Bacteroidia 2|976|200643 100.0 | |
| 8 k__Bacteria|p__Bacteroidetes|c__Bacteroidia|o__Bacteroidales 2|976|200643|171549 100.0 | |
| 9 k__Bacteria|p__Bacteroidetes|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae 2|976|200643|171549|815 100.0 | |
| 10 k__Bacteria|p__Bacteroidetes|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides 2|976|200643|171549|815|816 100.0 | |
| 11 k__Bacteria|p__Bacteroidetes|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides_vulgatus 2|976|200643|171549|815|816|821 50.80292 | |
| 12 k__Bacteria|p__Bacteroidetes|c__Bacteroidia|o__Bacteroidales|f__Bacteroidaceae|g__Bacteroides|s__Bacteroides_dorei 2|976|200643|171549|815|816|357276 49.19708 |