Mercurial > repos > thanhlv > humann_split_stratified_table

comparison humann_split_stratified_table.xml @ 0:81e57f1d3937 draft default tip

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/humann commit 6b06711cfba45855d5a992ed1c73c472eaef644f
author thanhlv
date Mon, 13 Feb 2023 16:23:45 +0000
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-1:000000000000 0:81e57f1d3937
1 <tool id="humann_split_stratified_table" name="Split a HUMAnN table" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" >
2 <description>into 2 tables (one stratified and one unstratified)</description>
3 <macros>
4 <import>macros.xml</import>
5 </macros>
6 <expand macro="edam_ontology"/>
7 <expand macro="requirements"/>
8 <expand macro="version"/>
9 <command detect_errors="exit_code"><![CDATA[
10 humann_split_stratified_table
11 --input '$input'
12 --output 'output'
13 ]]></command>
14 <inputs>
15 <param argument="--input" type="data" format="tsv,tabular" label="Stratified input table"/>
16 </inputs>
17 <outputs>
18 <data format="tabular" name="stratified" from_work_dir="output/*_stratified*" label="${tool.name} on ${on_string}: Stratified table"/>
19 <data format="tabular" name="unstratified" from_work_dir="output/*_unstratified*" label="${tool.name} on ${on_string}: Unstratified table"/>
20 </outputs>
21 <tests>
22 <test expect_num_outputs="2">
23 <param name="input" value="demo_genefamilies.tsv"/>
24 <output name="stratified" ftype="tabular">
25 <assert_contents>
26 <has_text text="UniRef90_A0A174QBF2|g__Bacteroides.s__Bacteroides_vulgatus" />
27 <has_text text="UniRef90_A0A3E5DKA1|g__Bacteroides.s__Bacteroides_vulgatus" />
28 </assert_contents>
29 </output>
30 <output name="unstratified" ftype="tabular">
31 <assert_contents>
32 <has_text text="UniRef90_A0A174QBF2" />
33 <not_has_text text="UniRef90_A0A174QBF2|g__Bacteroides.s__Bacteroides_vulgatus" />
34 <has_text text="UniRef90_A0A3E5DKA1" />
35 <not_has_text text="UniRef90_A0A3E5DKA1|g__Bacteroides.s__Bacteroides_vulgatus" />
36 </assert_contents>
37 </output>
38 </test>
39 </tests>
40 <help><![CDATA[
41 @HELP_HEADER@
42
43 This tool splits a stratified table into two files (one stratified and one unstratified).
44 ]]></help>
45 <expand macro="citations"/>
46 </tool>