Mercurial > repos > thanhlv > metamlst
diff metamlst.xml @ 1:4d3e54bace61 draft default tip
"planemo upload for repository https://github.com/quadram-institute-bioscience/galaxy-tools/tree/master/tools/metamlst commit 5eecf52d4fc6e1875235924568afde1d90789cb0-dirty"
| author | thanhlv |
|---|---|
| date | Wed, 23 Feb 2022 22:57:02 +0000 |
| parents | d1df295495a9 |
| children |
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--- a/metamlst.xml Wed Feb 23 10:17:46 2022 +0000 +++ b/metamlst.xml Wed Feb 23 22:57:02 2022 +0000 @@ -42,10 +42,8 @@ #end if ln -f -s '${library.input_2}' ${read2} && #else if str($library.type) == 'paired_collection': - #set pe_input_1 = $library.input_1.forward - #set pe_input_2 = $library.input_1.reverse - #set name_1 = re.sub('[^\w\-\s]', '_', str($library.pe_input_1.name)) + "_1" - #set name_2 = re.sub('[^\w\-\s]', '_', str($library.pe_input_2.name)) + "_2" + #set name_1 = re.sub('[^\w\-\s]', '_', str($library.input_1.forward.name)) + "_1" + #set name_2 = re.sub('[^\w\-\s]', '_', str($library.input_1.reverse.name)) + "_2" #if $library.input_1.forward.is_of_type("fastq.gz", "fastqsanger.gz"): #set read1 = $name_1 + '.fastq.gz' #set compressed = "GZ" @@ -151,8 +149,9 @@ cat ./out/*.out > log.txt && #end if #if $write_sequences - cat ./out/*.nfo > sequences.txt + cat ./out/*.nfo > sequences.txt && #end if + echo "Finished" ]]> </command> <inputs>