Mercurial > repos > thanhlv > polypolish
diff polypolish.xml @ 3:5f21f2cf1ede draft default tip
"planemo upload for repository https://github.com/quadram-institute-bioscience/galaxy-tools/tree/master/tools/polypolish commit c28f9849db4c6c3e666447d28f61cf98329898ec-dirty"
| author | thanhlv |
|---|---|
| date | Fri, 23 Sep 2022 23:37:59 +0000 |
| parents | 96580cd76488 |
| children |
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--- a/polypolish.xml Fri Sep 23 23:29:09 2022 +0000 +++ b/polypolish.xml Fri Sep 23 23:37:59 2022 +0000 @@ -52,13 +52,13 @@ </conditional> <param argument="min_depth" type="integer" value="5" min="1" label="Minimum depth" /> <param argument="fraction_invalid" type="float" value="0.2" min="0.0" max="1.0" label="Fraction value of the read depth to be considered invalid" /> - <param argument="fraction_valid" type="float" value="0.2" min="0.0" max="1.0" label="Ignore alignments with more than this many mismatches and indels" /> + <param argument="fraction_valid" type="float" value="0.5" min="0.0" max="1.0" label="Ignore alignments with more than this many mismatches and indels" /> <param argument="max_errors" type="integer" value="10" min="1" label="Fraction value of the read depth to be considered invalid" /> <param argument="debug" type="boolean" truevalue="--debug" falsevalue="" checked="false" label="Debug output" /> </inputs> <outputs> <data name="polished" format="fasta" from_work_dir="polished.fasta" label="${tool.name} on ${on_string} Polished assembly" /> - <data name="debug" format="tabular" from_work_dir="debug.tsv" label="${tool.name} on ${on_string} Polished assembly" > + <data name="debug_tsv" format="tabular" from_work_dir="debug.tsv" label="${tool.name} on ${on_string} Polypolish debug" > <filter>debug is True</filter> </data> </outputs>