# HG changeset patch
# User thanhlv
# Date 1663976279 0
# Node ID 5f21f2cf1ede9fbcd8eae2631ecff9e29647518e
# Parent  96580cd764882e90ea57210945b8c52e41eb5dfa
"planemo upload for repository https://github.com/quadram-institute-bioscience/galaxy-tools/tree/master/tools/polypolish commit c28f9849db4c6c3e666447d28f61cf98329898ec-dirty"

diff -r 96580cd76488 -r 5f21f2cf1ede polypolish.xml
--- a/polypolish.xml	Fri Sep 23 23:29:09 2022 +0000
+++ b/polypolish.xml	Fri Sep 23 23:37:59 2022 +0000
@@ -52,13 +52,13 @@
         </conditional>
         <param argument="min_depth" type="integer" value="5" min="1" label="Minimum depth" />
         <param argument="fraction_invalid" type="float" value="0.2" min="0.0" max="1.0" label="Fraction value of the read depth to be considered invalid" />
-        <param argument="fraction_valid" type="float" value="0.2" min="0.0" max="1.0" label="Ignore alignments with more than this many mismatches and indels" />
+        <param argument="fraction_valid" type="float" value="0.5" min="0.0" max="1.0" label="Ignore alignments with more than this many mismatches and indels" />
         <param argument="max_errors" type="integer" value="10" min="1" label="Fraction value of the read depth to be considered invalid" />
         <param argument="debug" type="boolean" truevalue="--debug" falsevalue="" checked="false" label="Debug output" />
     </inputs>
     <outputs>
     <data name="polished" format="fasta" from_work_dir="polished.fasta" label="${tool.name} on ${on_string} Polished assembly" />
-    <data name="debug" format="tabular" from_work_dir="debug.tsv" label="${tool.name} on ${on_string} Polished assembly" >
+    <data name="debug_tsv" format="tabular" from_work_dir="debug.tsv" label="${tool.name} on ${on_string} Polypolish debug" >
         <filter>debug is True</filter>
     </data>
     </outputs>