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comparison anisotropic_diffusion.xml @ 0:9a30c8f0f651 draft

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planemo upload for repository https://github.com/BMCV/galaxy-image-analysis/tools/anisotropic-diffusion/ commit 3036169a656a17a8c73a93241e375693f281bce8
author thomaswollmann
date Tue, 21 Feb 2017 09:11:07 -0500
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1 <tool id="anisotropic_diffusion" name="Anisotropic Diffusion" version="0.1">
2 <description>Edge-preserving, Anisotropic diffusion</description>
3 <requirements>
4 <requirement type="package" version="0.12.3" >scikit-image</requirement>
5 <requirement type="package" version="0.2.2">medpy</requirement>
6 <requirement type="package" version="1.12">numpy</requirement>
7 </requirements>
8 <command>
9 <![CDATA[
10 python "$__tool_directory__/anisotropic_diffusion.py" '$input' '$output' '$niter' '$kappa' '$gamma' '$eqoption'
11 ]]>
12 </command>
13 <inputs>
14 <param name="input" type="data" format="tiff,png,jpg,bmp" label="Image file"/>
15 <param label="Number of iterations" name="niter" optional="true" type="integer" value="50"/>
16 <param label="Conduction coefficient" name="kappa" optional="true" type="integer" value="50"/>
17 <param label="Speed of diffusion" name="gamma" optional="true" type="float" value="0.1"/>
18 <param name="eqoption" type="select" label="Diffusion Feature" help="Perona Malik diffusion equation">
19 <option value="1" selected="True">Favour high contrast edges</option>
20 <option value="2">Favour wide regions</option>
21 </param>
22 </inputs>
23 <outputs>
24 <data format="tiff" name="output"/>
25 </outputs>
26 <tests>
27 <test>
28 <param name="input" value="galaxyIcon_noText.png" />
29 <param name="niter" value="100" />
30 <param name="kappa" value="50" />
31 <param name="gamma" value="0.1" />
32 <param name="eqoption" value="1" />
33 <output name="output" ftype="tiff" />
34 </test>
35 </tests>
36 <help>Edge-preserving, Anisotropic image diffusion.</help>
37 <citations>
38 <citation type="doi">10.1109/34.56205</citation>
39 </citations>
40 </tool>